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Image by Felipe Vieira
Writer's pictureJim Jones

Label Cannabis Seedlings to Keep Them Apart

Updated: Oct 17

Proper labeling of germinating cannabis seeds is crucial for successful cultivation. Accurate labeling allows a grower to keep track of important primary information like strain names, cultivar types, and growth cycle dates.

This information helps growers identify and monitor growth patterns and specific requirements for each cultivar. Accurate marijuana labels will help ensure consistency, provide clarity, and aid in troubleshooting.


This article discusses the reasons for labeling germinating cannabis seeds and provides examples of multiple techniques for effective labeling. From simple methods to more advanced options, I’ll guide beginners and experienced growers with step-by-step instructions and clear explanations.

Why should I label my cannabis seedlings?

All cannabis plants look the same at first, so it’s critical to label your seedlings accurately. Nothing will doom a grow faster than confusion. Take the time to get it right the first time, and save yourself a world of trouble!


Keeping track of which strains you’re growing and what they need

Labeling germinating cannabis seeds provides a systematic approach for differentiating between seedlings and cultivars. Careful documentation helps growers note specific characteristics & patterns, optimal growing conditions, and other necessary details. This information will serve as a reference for future grows and enable successful replication or modification of cultivation techniques.


Tracking germination and growth stages of your cannabis plants

Accurate labeling assists growers in tracking the germination, growth rates, and stages of cannabis plants. This is important as germination periods can vary depending on the strain. By knowing precise germination dates, growers can anticipate growth patterns and plan their cultivation schedule accordingly, ensuring proper care and nutrition.


Troubleshooting and identifying issues

In the event of plant-related issues, proper labeling facilitates troubleshooting for comparing growth patterns, environmental conditions, and nutrient regimes. Growers can identify potential factors affecting plant health and remove potentially dangerous or inferior plants. Timely intervention can prevent further damage and preserve the overall crop quality.


Setting good habits

It’s vitally important to properly label germinating cannabis seeds from the very first moment you start them! (Say that again out loud.) Most plants will be transplanted 2- 3 times before harvest; you must have reliable marijuana labels or cannabis plant tags for clarity.


Waiting only increases the chances that you’ll forget; that is where the problems start. You do not need to create extra work (and stress) in your grow.

Growing plants successfully and consistently boils down to observation, repetition, and task management. Setting good habits from the beginning is essential for success, even if you’re growing only one cultivar, especially if you’re new to growing cannabis. Please take a look at our grow bible, so you can learn the best methods to germinate marijuana seeds.


Four smart ways to label your cannabis seedlings

There are several methods for labeling your seedlings; they can vary depending on your choices or the container or medium you’re using (soil, soilless, hydroponics, etc.) I’ve started with the simplest and most common methods and progressed to more complex (for larger applications). Keep it as simple and effective as you can.


Regardless of the method(s) you choose, you should take advantage of the camera in your phone and take backup photos of your germination trays and labels after setup. Back it up. I can’t stress this enough. Tags and labels can and do fall off.


1. Waterproof pen (or permanent marker) and sticky labels

Sticky label on pot

Example of sticky label on pot for seedlings

One of the simplest methods to use is using a waterproof pen or permanent marker with sticky labels (or strong adhesive tape). List the cultivar name (or initials) and the germination date.


Make sure all plants are clearly marked or quantified if using a single label for a group of plants. Write clearly and legibly to avoid any confusion (use thicker lettering if using a marker), and attach the label securely to the container the seed is placed in.

This method works best for labeling seedling trays and hydroponic propagation machines where plant tags may not work well. You can also use labels on plastic pots, but they are less effective than plant tags when used with soil or coco.


You may transplant a potted plant 3 or 4 times before being harvested; using one tag that stays with the plant is more effective than making new labels for each new pot.

If you use a permanent marker, be advised that it will fade due to water and UV light exposure. You must reapply every couple of weeks or as needed.


2. Waterproof pen (or permanent marker) and plastic plant tags

Plastic plant marker label

Example of labeling seedlings using a plastic plant marker

This method works best with soil-based seed germination techniques involving seedling trays or plastic pots. The tags are designed to be inserted into the soil after they’re labeled.


Tags will stay with the plants as they are transplanted into larger containers, making this one of the most efficient and cost-effective methods. Most of the horticulture industry uses plant tags labeled with a printer for efficiency.


Plant tags are relatively inexpensive, but if you do not wish to purchase them, make them from household items like popsicle sticks or cutting-up plastic containers (watch out for sharp edges). Remember to rewrite your tags when the ink starts to fade and take photos as a backup.

Connoisseur cultivators often use colored tags to differentiate between the many cultivars they are growing.


3. QR Code Labelling

Example of a QR code marker for seedlings in the soil

Example of a QR code marker for seedlings in the soil

QR codes offer an innovative and space-efficient solution for labeling germinating cannabis seeds. This method is ideal for tracking larger numbers of seeds and trays.

This method links the physical labels to repositories for data management and is an efficient tracking method for larger producers and growers. To set this up in your grow, follow these steps:

  1. a. Generate QR codes using free online tools or dedicated software. Include relevant information like strain details, germination date, and cultivation notes.

  2. b. Print the QR codes on adhesive labels. Ensure the print quality is high enough for scanners to read accurately.

  3. c. Attach the QR code labels to seed containers or mediums, such as pots or seedling trays.

  4. d. Scan the QR codes with a smartphone or dedicated QR code scanner app when making entries into your digital repository. This will allow easy access to detailed information about each seed.


4. Embedded RFID Tags

Radio Frequency Identification (RFID) technology provides an advanced labeling method. RFID tags contain a microchip that transmits unique identifiers wirelessly.

Granted, this method can become quite costly for most homegrowers, but if you’re planning on expanding your grow operation, it might be a good idea to look at this labeling method as a good investment in efficiency.

Here’s how to use RFID tags for labeling germinating cannabis seeds:

  1. a. Acquire RFID tags suitable for horticultural use and ensure they are waterproof.

  2. b. Assign an individual RFID tag to each seed and encode them with pertinent information using an RFID writer.

  3. c. Gently insert the RFID tag into the growing medium near the germinating seed, ensuring it remains easily accessible.

  4. d. Use an RFID scanner or reader to track and identify seeds quickly. The collected data can be stored digitally for further analysis.

My preferred method of labeling my cannabis seedlings

I like to keep my cultivation process as simple as possible, so I generally use adhesive labels or grey duct tape with a black Sharpie marker for labeling my germination trays or propagation machines. I’ve been doing it like that for years.

Rapiclip tag options

Examples of tag options from the brand Rapiclip

I will then transition to using plant tags after the first transplant. I don’t usually use plant tags during the initial germination phase as they can be in the way or potentially interfere with the seedlings.

Label info with permanent marker

Example of how you can write on a label with a permanent marker.

Use the process and medium you feel most comfortable with and take backup photos. Always get in the habit of labeling all the cannabis plants in your grow space. The cultivar’s name will often reflect its attributes, so be attentive and use that to make you a better grower.

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